<Visual
Schema
(XSD)>
MIGS
Genomic Standards Consortium, MIGS
migs
Migs
-
<Migs>
Group
111111
Xcom
Xpub
Xid
158_xid
-
<Genome Catalogue>
*
Group
111111
Xcom
Xpub
Xid
11_xid
-
<Gcat Identifier>
*
Group
111111
Xcom
Xpub
Xid
1_xid
-
<Genome Report Title>
*
Group
111111
Xcom
Xpub
Xid
2_xid
-
<Taxonomic Group>
*
Metagenome
Bacteria
Archaea
Plasmid
Eukaryote
Virus
Phage
Mitochondrion
Chloroplast
Nucleomorph
Xid
3_xid
Xcom
Xpub
-
<Genome Project Id>
*
Group
110001
Xcom
Xpub
Xid
4_xid
-
<Taxid>
*
Group
111110
Xid
5_xid
Xcom
Xpub
-
<Accession>
*
Group
111111
Xcom
Xpub
Xid
6_xid
-
<Relevance>
*
Group
111111
Xid
7_xid
Xcom
Xpub
-
<Ncbi Organism Name>
*
Group
110000
Xid
8_xid
Xcom
Xpub
-
<Ncbi Status>
*
Group
110000
Xid
9_xid
Xcom
Xpub
-
<Gold Stamp>
*
Group
110001
Xid
10_xid
Xcom
Xpub
-
<Investigation>
*
Xcom
Xpub
Xid
157_xid
-
<Study>
*
Xcom
Xpub
Xid
54_xid
-
<Organism>
*
...
Group
111111
Xcom
Xpub
Xid
30_xid
-
<Ploidy Level>
*
triploid
tetraploid
allopolyploid
unknown
Group
100000
Xid
13_xid
Xcom
Xpub
-
<Number Of Replicons>
*
Group
110100
Xid
14_xid
Xcom
Xpub
-
<Extrachromosomal Elements>
*
Group
010000
Xid
15_xid
Xcom
Xpub
-
<Estimated Size>
*
Group
100000
Xcom
Xpub
Xid
16_xid
-
<Biotic Relationship>
*
commensal
commensal capable of causing disease
free-living
free-living/opportunistic
pathogen
symbiote
Group
010000
Xid
21_xid
Xcom
Xpub
-
<Specific Host>
*
Group
000110
Xcom
Xpub
Xid
24_xid
-
<Specific Host Taxid>
*
Group
00110
Xcom
Xpub
Xid
22_xid
-
<Specific Host Classification>
*
environmental source
laboratory host
natural host
natural and laboratory host
unknown
Group
011000
Xid
23_xid
Xcom
Xpub
-
<Host Specificity And Range>
*
Group
000100
Xid
25_xid
Xcom
Xpub
-
<Health Disease Status Of Specific Host>
*
alive
asymptomatic
symptomatic
Group
000100
Xid
26_xid
Xcom
Xpub
-
<Normally Pathogenicity Or Not>
*
Group
000100
Xid
27_xid
Xcom
Xpub
-
<Trophic Level>
*
autotroph (producer)
heterotroph (consumer)
saprotroph (decomposer)
unknown
Group
110000
Xid
28_xid
Xcom
Xpub
-
<Estimated Community Diversity>
*
Group
000001
Xid
29_xid
Xcom
Xpub
-
<Phenotype>
*
...
Group
111111
Xcom
Xpub
Xid
34_xid
-
<Propagation>
*
lytic
lysogenic
incompatibility group
unknown
asexual
sexual
incompatibility_group_unknown
Xid
31_xid
Xcom
Xpub
-
<Relationship To Oxygen>
*
aerobic
anaerobic
facultative aerobe
facultative anaerobe
unknown
Group
010000
Xid
33_xid
Xcom
Xpub
-
<Environment>
*
Group
111111
Xcom
Xpub
Xid
53_xid
-
<Geographical Location>
*
Xcom
Xpub
Xid
48_xid
-
<Latitude>
*
Xcom
Xpub
Xid
40_xid
-
<Decimal>
*
Group
111111
Xcom
Xpub
Xid
35_xid
-
<Degrees>
*
Group
111111
Xcom
Xpub
Xid
36_xid
-
<Minutes>
*
Group
111111
Xcom
Xpub
Xid
37_xid
-
<Seconds>
*
Group
111111
Xcom
Xpub
Xid
38_xid
-
<Direction Latitude>
*
North
South
Group
111111
Xid
39_xid
Xcom
Xpub
-
<Longitude>
*
Xcom
Xpub
Xid
46_xid
-
<Decimal>
*
Group
111111
Xcom
Xpub
Xid
41_xid
-
<Degrees>
*
Group
111111
Xcom
Xpub
Xid
42_xid
-
<Minutes>
*
Group
111111
Xcom
Xpub
Xid
43_xid
-
<Seconds>
*
Group
111111
Xcom
Xpub
Xid
44_xid
-
<Direction Longitude>
*
East
West
Group
111111
Xid
45_xid
Xcom
Xpub
-
<Depth Or Altitude>
*
Group
111111
Xid
47_xid
Xcom
Xpub
-
<Date And Time Of Sample Collection>
*
Group
111111
Xcom
Xpub
Xid
51_xid
-
<Date>
*
...
Group
111111
Xid
49_xid
Xcom
Xpub
-
<Time Of Day>
*
Group
111111
Xid
50_xid
Xcom
Xpub
-
<Habitat Type>
*
air
aquatic
freshwater
host_associated
human_host_associated
marine
soil
terrestrial
unknown
terrestrial_plant_associated
Group
111111
Xid
52_xid
Xcom
Xpub
-
<Assay>
*
Xcom
Xpub
Xid
76_xid
-
<Sample Processing>
*
...
Group
111111
Xcom
Xpub
Xid
66_xid
-
<Isolation And Growth Conditions>
*
Group
010000
Xid
55_xid
Xcom
Xpub
-
<Volume Of Sample>
*
Group
000001
Xcom
Xpub
Xid
56_xid
-
<Sampling Strategy>
*
enriched
normalized
screened
plaque assay
Group
000001
Xid
57_xid
Xcom
Xpub
-
<Nucleic Acid Extraction>
*
Group
111111
Xcom
Xpub
Xid
60_xid
-
<Nucleic Acid Extraction Method>
*
formaldihide/CTAB extraction
Phenol/Chloroform
Wheatcroft and Williams
Group
111111
Xid
58_xid
Xcom
Xpub
-
<Dna Amplification Method>
*
emPCR
Genomiphi
MDA
plones
pcr
Group
111111
Xid
59_xid
Xcom
Xpub
-
<Data Processing>
*
...
Group
111111
Xcom
Xpub
Xid
75_xid
-
<Finishing>
*
Group
110000
Xcom
Xpub
Xid
73_xid
-
<Finishing Strategy>
*
complete
draft
Group
110000
Xid
70_xid
Xcom
Xpub
-
<Fold Coverage>
*
1x
2x
3x
4x
5x
6x
7x
8x
9x
10x
11x
12x
13x
14x
Xid
71_xid
Xcom
Xpub
-
<Number Of Contigs>
*
Group
110000
Xid
72_xid
Xcom
Xpub
-
<Classification Method For Fragment>
*
Group
000001
Xid
74_xid
Xcom
Xpub
-
<Extensions>
*
Group
000001
Xcom
Xpub
Xid
114_xid
-
<MIMS>
*
Group
000001
Xcom
Xpub
Xid
113_xid
-
<Study>
*
Xcom
Xpub
Xid
112_xid
-
<Ocean Water>
*
Group
000001
Xcom
Xpub
Xid
96_xid
-
<Temperature>
*
Group
000001
Xcom
Xpub
Xid
77_xid
-
<PH>
*
Group
000001
Xcom
Xpub
Xid
78_xid
-
<Salinity>
*
Group
000001
Xcom
Xpub
Xid
79_xid
-
<Pressure>
*
Group
000001
Xcom
Xpub
Xid
80_xid
-
<Chlorophyl>
*
Group
000001
Xcom
Xpub
Xid
81_xid
-
<Conductivity>
*
Group
000001
Xcom
Xpub
Xid
82_xid
-
<Light Intensity>
*
Group
000001
Xcom
Xpub
Xid
83_xid
-
<DOC>
*
Group
000001
Xcom
Xpub
Xid
84_xid
-
<Current>
*
Group
000001
Xcom
Xpub
Xid
85_xid
-
<Atmospheric Data>
*
Group
000001
Xcom
Xpub
Xid
86_xid
-
<Density>
*
Group
000001
Xcom
Xpub
Xid
87_xid
-
<Alkalinity>
*
Group
000001
Xcom
Xpub
Xid
88_xid
-
<Dissolved Oxygen>
*
Group
000001
Xcom
Xpub
Xid
89_xid
-
<POC>
*
Group
000001
Xcom
Xpub
Xid
90_xid
-
<Phosphate>
*
Group
000001
Xcom
Xpub
Xid
91_xid
-
<Nitrate>
*
Group
000001
Xcom
Xpub
Xid
92_xid
-
<Sulphates>
*
Group
000001
Xcom
Xpub
Xid
93_xid
-
<Sulphides>
*
Group
000001
Xcom
Xpub
Xid
94_xid
-
<Primary Production>
*
Group
000001
Xcom
Xpub
Xid
95_xid
-
<Sediment Pore Water>
*
Group
000001
Xcom
Xpub
Xid
104_xid
-
<Alkalinity>
*
Group
000001
Xcom
Xpub
Xid
97_xid
-
<Dissolved Oxygen>
*
Group
000001
Xcom
Xpub
Xid
98_xid
-
<EH>
*
Group
000001
Xcom
Xpub
Xid
99_xid
-
<Major Cations>
*
Group
000001
Xcom
Xpub
Xid
100_xid
-
<Major Anions>
*
Group
000001
Xcom
Xpub
Xid
101_xid
-
<Nitrogen Speciation>
*
Group
000001
Xcom
Xpub
Xid
102_xid
-
<Phosphorus Speciation>
*
Group
000001
Xcom
Xpub
Xid
103_xid
-
<Sediment>
*
Group
000001
Xcom
Xpub
Xid
111_xid
-
<Sediment Depth>
*
Group
000001
Xcom
Xpub
Xid
105_xid
-
<Currents>
*
Group
000001
Xcom
Xpub
Xid
106_xid
-
<Incident Light>
*
Group
000001
Xcom
Xpub
Xid
107_xid
-
<Porosity>
*
Group
000001
Xcom
Xpub
Xid
108_xid
-
<Permeabillity>
*
Group
000001
Xcom
Xpub
Xid
109_xid
-
<Grain Size Distribution>
*
Group
000001
Xcom
Xpub
Xid
110_xid
-
<Sources>
*
Group
000000
Xcom
Xpub
Xid
156_xid
-
<Ncbi Genome Projects Prokaryotes>
*
Xcom
Xpub
Xid
130_xid
-
<Ncbi Taxonomic Group>
*
Xid
115_xid
Xcom
Xpub
-
<Ncbi Sequence Status>
*
Xid
116_xid
Xcom
Xpub
-
<Ncbi Genome Size>
*
Xid
117_xid
Xcom
Xpub
-
<Ncbi Gc Content>
*
Xid
118_xid
Xcom
Xpub
-
<Ncbi Gram Stain>
*
Xid
119_xid
Xcom
Xpub
-
<Ncbi Shape>
*
Xid
120_xid
Xcom
Xpub
-
<Ncbi Arrangement>
*
Xid
121_xid
Xcom
Xpub
-
<Ncbi Endospore>
*
Xid
122_xid
Xcom
Xpub
-
<Ncbi Motility>
*
Xid
123_xid
Xcom
Xpub
-
<Ncbi Salinity>
*
Xid
124_xid
Xcom
Xpub
-
<Ncbi Oxygen>
*
Xid
125_xid
Xcom
Xpub
-
<Ncbi Habitat>
*
Xid
126_xid
Xcom
Xpub
-
<Ncbi Temperature Range>
*
Xid
127_xid
Xcom
Xpub
-
<Ncb I Pathogen>
*
Xid
128_xid
Xcom
Xpub
-
<Ncbi Disease>
*
Xid
129_xid
Xcom
Xpub
-
<Gold>
*
Xcom
Xpub
Xid
155_xid
-
<Gold Organism>
*
Xid
131_xid
Xcom
Xpub
-
<Gold Strain>
*
Xid
132_xid
Xcom
Xpub
-
<Gold Serovar>
*
Xid
133_xid
Xcom
Xpub
-
<Gold Culture>
*
Xid
134_xid
Xcom
Xpub
-
<Gold Symbiont>
*
Xid
135_xid
Xcom
Xpub
-
<Gold Type>
*
Xid
136_xid
Xcom
Xpub
-
<Gold Phylogeny>
*
Xid
137_xid
Xcom
Xpub
-
<Gold Status>
*
Xid
138_xid
Xcom
Xpub
-
<Gold Phenotype>
*
Xid
139_xid
Xcom
Xpub
-
<Gold Relevance>
*
Xid
140_xid
Xcom
Xpub
-
<Gold Disease>
*
Xid
141_xid
Xcom
Xpub
-
<Gold Ecotype>
*
Xid
142_xid
Xcom
Xpub
-
<Gold Isolatiion>
*
Xid
143_xid
Xcom
Xpub
-
<Gold Country>
*
Xid
144_xid
Xcom
Xpub
-
<Gold Availabiity>
*
Xid
145_xid
Xcom
Xpub
-
<Gold Size>
*
Xid
146_xid
Xcom
Xpub
-
<Gold Orfs>
*
Xid
147_xid
Xcom
Xpub
-
<Gold Data>
*
Xid
148_xid
Xcom
Xpub
-
<Gold Institute>
*
Xid
149_xid
Xcom
Xpub
-
<Gold Funding>
*
Xid
150_xid
Xcom
Xpub
-
<Gold Publication>
*
Xid
151_xid
Xcom
Xpub
-
<Gold Date>
*
Xid
152_xid
Xcom
Xpub
-
<Gold Contact Name>
*
Xid
153_xid
Xcom
Xpub
-
<Gold Contact Email>
*
Xid
154_xid
Xcom
Xpub
© 2007
VisualSchema